Biological Informatics

Biological Informatics
[Download Biological Informatics White Paper Link Compilation]

BiologicalInformatics.info is a Subject Tracer™ Information Blog developed and created by the Virtual Private Library™. It is designed to bring together the latest resources and sources on an ongoing basis from the Internet for biological informatics (health informatics, neuroinformatics, biodiversity informatics and biomolecular informatics) which are listed below. We always welcome suggestions of additional sites and resources to be added to this comprehensive listing and please submit by clicking here. This site has been developed and maintained by Marcus P. Zillman, M.S., A.M.H.A.; Internet expert, author, keynote speaker, and consultant. His latest white papers include Searching the Internet, Academic and Scholar Search Engines and Sources, and Knowledge Discovery Resources 2014. All of his Subject Tracer™ Information Blogs and his white papers are available from WhitePapers.us. His latest monthly column is available by clicking here. Subscribe to his free monthly Awareness Watch™ Newsletter. Learn more by clicking here.

The Biological Informatics Subject Tracer™ Information Blog was listed number two in the Top 50 Health Informatics Blogs. See the entire list by clicking here.

The Biological Informatics Subject Tracer™ Information Blog was named a Top 50 Continuing Medical Education Blog. See the entire list by clicking here.

This Biological Informatics Subject Tracer Information Blog is divided into the following categories:

BIOLOGICAL INFORMATICS
HEALTH INFORMATICS (Medical Informatics)
NEUROINFORMATICS (NI)
BIODIVERSITY INFORMATICS (BDI)
BIOMOLECULAR INFORMATICS (BioInformatics)
Current Subject Tracer™ Information Blogs

Biological Informatics:

1000 Genomes Project
http://www.1000genomes.org/

Academic and Scholar Search Engines and Sources
http://www.ScholarSearchEngines.com/

A Genetic Atlas of Human Admixture History
http://admixturemap.paintmychromosomes.com/

Agriculture and Biology Journal of North America (ABJNA)
http://scihub.org/ABJNA/index.html

BeeSpace – An Environment for Analyzing Nature and Nurture in Societal Roles
http://www.beespace.illinois.edu/

BEN
http://www.biosciednet.org/portal

BioEd Online – Biology Teacher Resources from Baylor College of Medicine
http://www.bioedonline.org/

BioethicsWeb [Intute Closed in July 2011]
http://www.intute.ac.uk/bioethicsweb/

Biohealthmatics.com – The Biomedical Informatics Career Portal
http://www.biohealthmatics.com/

Bioinformatics Journal
http://bioinformatics.oxfordjournals.org/

Bioinformatics Organization
http://bioinformatics.org/

Bioinformation
http://www.bioinformation.net/

Bioline International
http://www.bioline.org.br/

Biological and Chemical Terrorism Information for Healthcare Professionals
http://www.istl.org/04-winter/internet.html

Biological Journals and Abbreviations
http://home.ncifcrf.gov/research/bja/

Biology and Medicine
http://www.biolmedonline.com/

Biology News Net
http://www.biologynews.net/

Biomat.net – The Biomaterials Network
http://www.biomat.net/

Biomechanics and Modeling in Mechanobiology
http://www.springer.com/materials/mechanics/journal/10237

BioMedExperts – Scientific Social Networking
http://www.biomedexperts.com/

Biomedical Digital Libraries [Open Access – Archives Available]
http://www.bio-diglib.com/

BIOS – Biological Innovation for Open Society
http://www.bios.net/daisy/bios/home.html

Biosharing
http://www.biosharing.org/

BioText Search Engine
http://biosearch.berkeley.edu/

Briefings in Bioinformatics
http://bib.oxfordjournals.org/

caBIG™ – cancer Biomedical Informatics Grid
https://cabig.nci.nih.gov/community/workspaces/Architecture/caGrid/

Centre for Agricultural Bioscience International (CABI)
http://www.cabi.org/

ChemIDplus Database
http://sis.nlm.nih.gov/chemical.html

ChemSpider
http://www.chemspider.com/

Cytoscape – Open Source Bioinformatics Platform for Network Analysis and Visualization
http://cytoscape.org/

DNA From the Beginning
http://dnaftb.org/

eHealthcareBot Search Engine
http://www.eHealthcareBot.com/

ePosters.net: The Online Journal of Scientific Posters
http://www.eposters.net/

European Bioinformatics Institute (EBI)
http://www.ebi.ac.uk/about

Frontiers in BioScience                                                                                                                                                                                                                                                                                                                                  http://www.bioscience.org/

Gene Ontology™ (GO) Consortium
http://www.geneontology.org/

Genetic Engineering and Biotechnology Journal (GEBJ) [Publication Discontinued 2011]
http://astonjournals.com/gebj.html

Genome Gateway [Publication Discontinued July 2011]
http://www.nature.com/omics/index.html

Genomic Medicine
http://www.springer.com/biomed/journal/11568

Genomics Glossaries & Taxonomies
http://www.genomicglossaries.com/

GoPubMed.org – Life-Science Search Engine
http://www.gopubmed.org/web/gopubmed/

GVSS – Grid Virtual Screening Service
http://gvss2.twgrid.org/

Human Genome Project Education Resources
http://web.ornl.gov/sci/techresources/Human_Genome/education/index.shtml

InfoBionics – Flexible Data Mining Applications
http://www.infobionics.com/

International Cancer Genome Consortium (ICGC)
http://www.icgc.org/

International Journal of Agricultural and Biological Engineering (IJABE)
http://www.ijabe.org/index.php/ijabe

International Journal Bioautomation
http://www.clbme.bas.bg/bioautomation/

International Journal of Bioinformatics Research and Applications (IJBRA)
http://www.inderscience.com/jhome.php?jcode=ijbra

International Journal of Biological Sciences and Technology (IJBLST)
http://www.ijblst.org/

International Journal of Biomedical Science (IJBS)
http://www.ijbs.org/HomePage.aspx

International Journal of Biometrics and Bioinformatics (IJBB)
http://www.cscjournals.org/csc/journals/IJBB/description.php?JCode=IJBB

International Journal of Healthcare Information Systems and Informatics (IJHISI)
http://www.igi-global.com/journal/international-journal-healthcare-information-systems/1094

isainfrastructure – Investigation/Study/Assay
http://isa-tools.org/

Journal of Biomedical Sciences and Research (JBSR) [Archives available till 2011 issue]
http://www.jbsr.pharmainfo.in/

Journal of Biomedical Semantics
http://www.jbiomedsem.com/

Journal of Biomedicine and Biotechnology [now called BioMed Research International]
http://www.hindawi.com/journals/bmri/

Journal of Visualized Experiments (JoVE) – Biological Research in a Video Format
http://www.jove.com/

LabGuru – Research Management Resource
http://www.labguru.com/

LeadDiscovery – Dedicated to Drug Discovery
http://www.leaddiscovery.co.uk/

Map of Life – Integrating Species Distribution Knowledge
http://beta.map-of-life.appspot.com/

mBio
http://mbio.asm.org/

MEDIE – Intelligent Search Engine for Biomedical Correlations
http://www.nactem.ac.uk/tsujii/medie/

nanoHUB – Simulation, Education and Community for Nanotechnology
https://www.nanohub.org/

Nature RSS Newsfeeds
http://www.nature.com/webfeeds/index.html

NLM Medical Text Indexer (MTI)
http://ii.nlm.nih.gov/MTI/index.shtml

NuGO Bioethics Guidelines Tool
http://nugo.dife.de/bot/index.php

Open Bioinformatics Journal
http://www.benthamscience.com/open/tobioij/

Open Biological and Biomedical Ontologies (OBO)
http://www.obofoundry.org/

Open-i Project – An Open Access Biomedical Image Search Engine
http://openi.nlm.nih.gov/

Open Tissue Wiki
http://www.opentissue.org/mediawiki/index.php/Main_Page

OReFiL: Online Resource Finder for Lifesciences
http://orefil.dbcls.jp/en/search/top

Personal Genome Project (PGP)
http://www.personalgenomes.org/

PhysioBank
http://www.physionet.org/physiobank/

PhysioNet – Research Resource for Complex Physiologic Signals
http://www.physionet.org/

Plant Products Research Journal
http://www.ajol.info/index.php/pprj

Project Ranks Billions of Drug Interactions
http://www.Drugable.com/

Protocol Online – Your Lab’s Reference Book
http://www.protocol-online.org/

Pubget – Search Across BioMedicine PDFs
http://pubget.com/

Public Data Sets on AWS
http://aws.amazon.com/publicdatasets/

R&D Chemicals – Chemical Compounds Database
http://www.rdchemicals.com/

Reflect: Automated Annotation of Scientific Terms of Proteins and Small Molecules
http://reflect.ws/

ResearchGATE – Professional Network for Scientists
https://www.researchgate.net/

Resource Informagen™ – Biotech Company Directories
http://informagen.com/Directories/Biotech.php

Resources for Bioinformatics
http://guides.lib.udel.edu/content.php?pid=163662

Scientist Solutions – International Life Science Community
http://www.scientistsolutions.com/

Scitable – A Collaborative Learning Space for Life Sciences
http://www.nature.com/scitable

ScratchPads – Research Community Working On the Web
http://www.editwebrevisions.info/scratchpads

SHIRAZ Project
http://shiraz.ist.psu.edu/

South African National Bioinformatics Institute
http://www.sanbi.ac.za/

The Biology Project
http://www.biology.arizona.edu/

The TAMBIS Project
http://www.cs.man.ac.uk/~stevensr/tambis/

Transcriptic – Let Their Robots Do Your Life Science
https://www.transcriptic.com/

uBio – Indexing and Organizing 11,106,374 Biological Names
http://www.ubio.org/

VADLO – BioMedical and Life Sciences Search Engine
http://vadlo.com/

Visual Medical Dictionary
http://www.curehunter.com/public/dictionary.do

 

HEALTH INFORMATICS:  (Medical Informatics)

American Medical Informatics Association (AMIA)
http://www.amia.org/

Authoratory – Database of Leading PubMed Scientists
http://www.authoratory.com/

Biomedical Digital Libraries [No longer being Published; Archives Available]
http://www.bio-diglib.com/

Biomedical Informatics Research Network
http://www.birncommunity.org/

Biomedical Research Web Directory
http://www.biores.org/

CureHunter – Medical Search and Discovery
http://www.CureHunter.com/

Electronic Journal of Health Informatics (eJHI)
http://ejhi.net/ojs/index.php/ejhi

Encyclopedia of Biomaterials and Biomedical Engineering
http://www.tandfonline.com/doi/book/10.1081/E-EBBE

Framingham SNP Health Association Resource (SHARe)
http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000007.v20.p8

Health Informatics Forum – Discussion Forum for Health Informatics
Professionals and Students

http://www.healthinformaticsforum.com/

International Journal of Biomedical Sciences (IJBS)
http://www.ijbs.org/

International Journal of Medical Microbiology
http://www.sciencedirect.com/science/journal/14384221

JMIR : Journal of Medical Internet Research
http://www.jmir.org/

Journal of Medicine and Biomedical Research
http://www.bioline.org.br/jm

MedBioWorld [Medical and Bioscience Directory Mainly in German, Some English]
http://www.sciencekomm.at/

Open Biomarkers Journal
http://www.benthamscience.com/open/tobiomj/

OpenClinica – Clinical Research Studies Software
https://community.openclinica.com/

Open Directory – Health: Medicine: Informatics
http://www.dmoz.org/Health/Medicine/Informatics/

openEHR [Domain-driven platform for e-Health Systems]
http://www.openehr.org/

RIKEN Center for Genomic Medicine
http://www.src.riken.jp/english/

Search Medical Algorithms
http://www.medal.org/

 

NEUROINFORMATICS:  (NI)

Institute of Neuroinformatics
http://www.ini.unizh.ch/

International Neuroinformatics Coordinating Facility (INCF)
http://www.incf.org/

National Ecological Observatory Network (NEON)
http://www.neoninc.org/

NIH Guide: The Human Brain Project (Neuroinformatics): Phase I – Feasibility; Phase II – Refinements, Maintenance and Integration
http://grants1.nih.gov/grants/guide/pa-files/PAR-03-035.html

SenseLab
http://senselab.med.yale.edu/

 

BIODIVERSITY INFORMATICS:  (BDI)

Biodiversity Informatics Peer Reviewed Open Access Journal
https://journals.ku.edu/index.php/jbi

Chemistry & Biodiversity
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291612-1880

Global Biodiversity Information Facility
http://www.gbif.org/

GRAIN – Agricultural Biodiversity
http://www.grain.org/

Open Directory – Science: Environment: Biodiversity: Informatics
http://www.dmoz.org/Science/Environment/Biodiversity/Informatics/

Overview of Biodiversity Informatics
http://research.calacademy.org/

Systematics and Biodiversity
http://journals.cambridge.org/action/displayJournal?jid=SYS

 

BIOMOLECULAR INFORMATICS: (BioInformatics)

AANT : Amino Acid-Nucleotide Interaction Database
http://aant.icmb.utexas.edu/

ActionBioscience.org
http://www.actionbioscience.org/index.html

AddGene – Better Way to Share Plasmids
http://www.addgene.org/

Advances in Bioinformatics
http://www.hindawi.com/journals/abi/

Algorithms for Molecular Biology
http://www.almob.org/

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291552-485X

Ares Lab Yeast Intron Database
http://compbio.soe.ucsc.edu/yeast_introns.html

ASC: Active Sequence Collection
http://bioinformatica.isa.cnr.it/ASC/

BELIT – Bioethics Literature Database
http://www.drze.de/belit-1/search-2/quick-search/recherche.html?set_language=en

BioBank
http://biobank.org/

Biocompare – Buyer’s Guide for Life Scientists
http://www.biocompare.com/

Bioenergy Research
http://www.biopress.dk/

BioForge – Community for Biological Innovation
http://www.cambia.org/daisy/cambia/4272

BioGRID
http://www.thebiogrid.org/

Bioinformatics and Biology Insights
http://www.la-press.com/bioinformatics-and-biology-insights-journal-j39

Bioinformatics
http://informagen.com/Bioinformatics.php

Bioinformatics.Net
http://www.technologynetworks.com/Informatics/

BioInformatics.org
http://www.BioInformatics.org/

BioInformatics Links
http://www.ii.uib.no/~inge/list.html

BioInformatics Tools
http://web.ornl.gov/sci/techresources/Human_Genome/index.shtml
http://www.ncbi.nlm.nih.gov/guide/all/#tools_

Bioinformatics – UCSC Science & Engineering Library Subject Guides
http://guides.library.ucsc.edu/biologymcd

Bioinformatic Workflow Builder Interface
https://www.ibm.com/developerworks/community/groups/service/html/communityview?communityUuid=18d10b14-e2c8-4780-bace-9af1fc463cc0

Bioinformation
http://www.bioinformation.net/

Biointerphases: An Open Access Journal for the Biomaterials Interface Community
http://biointerphases.org/

Biological Theory: Integrating Development, Evolution, and Cognition
http://mitpressjournals.org/biot

Biology Direct
http://www.biologydirect.com/

Biomacromolecules
http://pubs.acs.org/journal/bomaf6
Bio Mapping
http://biomapping.net/

Biomarker Insights
http://www.la-press.com/biomarker-insights-journal-j4

BioMed Central
http://www.biomedcentral.com/

Biometric Technology Today
http://www.sciencedirect.com/science/journal/09694765

BioMolecular Engineering Research Institute (BMERC)
http://www.bu.edu/bmerc/

BioNanomatrix, Inc (BNM)
http://www.bionanomatrix.com/

BIONLP.ORG – Natural Language Processing of Biology Text
http://www.ccs.neu.edu/home/futrelle/bionlp/

BioRuby [Open source bioinformatics library for Ruby]
http://bioruby.org/

Biotechnology Journal (BTJ)
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291860-7314

Biotechnology Resources
http://www.BiotechnologyResources.info/

BLAST UTR db: Untranslated Regions Database
http://www.ba.itb.cnr.it/BIG/Blast/BlastUTR.html

Briefings in Functional Genomics and Proteomics
http://bfg.oxfordjournals.org/

BSML – Bioinformatics Sequence Markup Language
http://xml.coverpages.org/bsml.html

Cambridge Crystallographic Data Centre
http://www.ccdc.cam.ac.uk/

CAMERA (Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis)
http://camera.calit2.net/

Cancer Genome Atlas
http://cancergenome.nih.gov/

Cancer Genomics Publications Data Sets
http://www.broadinstitute.org/cgi-bin/cancer/datasets.cgi

Cell Biochemistry and Biophysics (CBB)
http://www.springer.com/life+sciences/biochemistry+%26+biophysics/journal/12013

Cell Division
http://www.celldiv.com/

Centre for Molecular and Biomolecular Informatics
http://www2.cmbi.ru.nl/

Chemical Biology & Drug Design
http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291747-0285

Complete Genomics (CGI)
http://completegenomics.com/

Computational Biology and Chemistry
http://www.sciencedirect.com/science/journal/14769271

Connectivity Map – Connecting Diseases, Genes and Drugs
http://www.broadinstitute.org/genome_bio/connectivitymap.html

CorePsych – Brain and Body Connections
http://www.corepsych.com/

CSH Protocols
http://cshprotocols.cshlp.org/

CUTG : Codon Usage Tabulated from GenBank
http://www.kazusa.or.jp/codon

Data Mining Resources
http://www.DataMiningResources.info/

dbGaP – Database of Genotype and Phenotype
http://www.ncbi.nlm.nih.gov/gap

Developmental Cell
http://www.cell.com/developmental-cell/home

DiscoveR8 – Life Sciences News, Discoveries, Hypotheses and Procedures [Last updated 4 years ago]
http://www.discover8.com/

DNA Research
http://dnaresearch.oxfordjournals.org/

DrugBank Database
http://www.drugbank.ca/

EBI and Ghent University Launch PRIDE: An Open Source Database Of Protein
Identifications

http://www.innovations-report.com/html/reports/life_sciences/report-48290.html

EMBL SMART : Simple Modular Architecture Research Tool (for Proteins)
http://smart.embl.de/

Encyclopedia of DNA Elements (ENCODE)
http://www.encodeproject.org/ENCODE/

Encyclopedia of Medical Genomics and Proteomics
http://www.tandfonline.com/doi/book/10.1081/E-EMGP

Entrez – The Life Sciences Cross-Database Search Engine
http://www.ncbi.nlm.nih.gov/gquery/gquery.fcgi

Environmental Bioindicators
http://www.tandfonline.com/toc/uebi20/current

European Bioinformatics Institute
http://www.ebi.ac.uk/

European Bioinformatics Institute: Research Groups
http://www.ebi.ac.uk/research

Evolutionary Bioinformatics Online (EBO)
http://www.la-press.com/evolutionary-bioinformatics-journal-j17

Evolutionary Intelligence
http://www.neuroblast.net/

Functional Glycomics Gateway
http://www.functionalglycomics.org/

Genamics SoftwareSeek
http://genamics.com/software/

GeneEd: Genetics, Education, Discovery
http://geneed.nlm.nih.gov/index.php

Genetic Science Learning Center
http://gslc.genetics.utah.edu/

Genographic Project
https://genographic.nationalgeographic.com/

Genome Bioinformatics – UCSC
http://genome.ucsc.edu/

Genome Biology and Evolution
http://gbe.oxfordjournals.org/

Genome Browsers
http://zillman.blogspot.com/2004/03/genome-browsers.html

Genome Tools
http://cmr.jcvi.org/tigr-scripts/CMR/shared/Menu.cgi?menu=genome

Genome-Tools
http://freecode.com/projects/genome-tools?branch_id=46085&release_id=183048

Genomics, Proteomics & Bioinformatics
http://www.sciencedirect.com/science/journal/16720229

GenScript – Your One Stop Wet Lab for Biology
http://www.genscript.com/

Go3R – Knowledge Based Semantic Search Engine To Avoid Animal Experiments
http://www.go3r.org/

GoPubMed – Ontology-based Literature Search
http://www.gopubmed.com/

Guide to Selected  Bioinformatics Internet Resources
http://www.istl.org/02-winter/internet.html

GUS – The Genomics Unified Schema [Site Last Updated 2005]
http://www.gusdb.org/

HapMap Project – Identify and Catalog Genetic Similarities and Differences in Human Beings
http://hapmap.ncbi.nlm.nih.gov/

H-Invitational Database (H-Inv DB)
http://www.h-invitational.jp/

HS3D – Homo Sapiens Splice Sites Dataset
http://www.sci.unisannio.it/docenti/rampone

Immunome Research
http://www.immunome-research.com/

International Journal of Data Mining and Bioinformatics (IJDMB)
http://www.inderscience.com/jhome.php?jcode=ijdmb

International Journal of Human Genetics
http://www.krepublishers.com/02-Journals/IJHG/IJHG-00-0-000-000-2001-Web/IJHG-00-0-000-000-2001-1-Cover.htm

Internet Resources for Bioinformatics
http://guides.lib.udel.edu/content.php?pid=163662

Invertebrate Biology
http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291744-7410

JCVI Cloud BioLinux
http://www.jcvi.org/cms/research/projects/jcvi-cloud-biolinux/overview/

Journal of Biological Chemistry
http://www.jbc.org/

Journal of Biomaterials Science, Polymer Edition
http://www.ingentaconnect.com/content/tandf/bsp

Journal of Cell and Molecular Biology
http://jcmb.halic.edu.tr/

Journal of Genetics
http://www.ias.ac.in/jgenet/

Journal of Molecular Histology
http://link.springer.com/journal/10735

Journal of Molecular Signaling
http://www.jmolecularsignaling.com/

Journal of Pharmacy and Bioresources (JPB)
http://www.ajol.info/index.php/jpb

Journal of Proteomics & Bioinformatics (JPB)
http://www.omicsonline.org/jpbhome.php

Journal of Proteome Research
http://pubs.acs.org/journal/jprobs

Kaggle – Data Mining, Forecasting and BioInformatics Competitions
http://kaggle.com/

KEGG: Kyoto Encyclopedia of Genes and Genomes
http://www.genome.jp/kegg/

Lawrence Berkeley National Laboratory: VISTA
http://genome.lbl.gov/vista/index.shtml

Macromolecular Bioscience
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291616-5195

MethDB : DNA Methylation Database
http://www.methdb.de/

Microbial Genome Sequencing Program
http://www.nsf.gov/pubs/2008/nsf08511/nsf08511.htm

Microbiology [Particular coverage for Russian microbiology-related developments]
http://link.springer.com/journal/11021

Microsoft Biology Tools (MBT)
http://research.microsoft.com/en-US/projects/bio/mbt.aspx#MSR-Biology-Ext

MIX – Meta-analysis with Interactive eXplanations in Excel
http://www.meta-analysis-made-easy.com/

Molecular and Cellular Proteomics (MCP)
http://www.mcponline.org/

Molecular Biology Database Collection : 2004 Update [Nucleic Acids Research]
http://nar.oxfordjournals.org/content/suppl/2004/01/27/32.suppl_1.D3.DC1

Molecular BioSystems
http://pubs.rsc.org/en/journals/journalissues/mb#!recentarticles&all

Molecular Cytogenetics
http://www.molecularcytogenetics.org/

Molecular Genetics, Microbiology and Virology
http://link.springer.com/journal/11965

Molecular Informatics Resource for the Analysis of Gene Expression (MIRAGE)
http://www.geisr.com/

Molecular Plant-Microbe Interactions (MPMI)
http://www.apsnet.org/publications/mpmi/Pages/default.aspx

National Center for BioTechnology Information (NCBI)
http://www.ncbi.nlm.nih.gov/

Nature Methods
http://www.nature.com/nmeth/index.html

Neurochemical Journal
http://link.springer.com/journal/11710

Neuron Glia Biology
http://journals.cambridge.org/action/displayJournal?jid=NGB

Neurotransmitter – Biomedical Information in Neuroscience, Pharmacology and Psychology
http://www.neurotransmitter.net/

NHGRI Statute and Legislation Database
http://www.genome.gov/PolicyEthics/LegDatabase/pubsearch.cfm

NodalPoint.org – Science Podcast [Last Updated 2011]
http://www.nodalpoint.org/

Oligonucleotides – now known as Nucleic Acid Therapeutics                                                                                                                                                                                                                                          http://online.liebertpub.com/loi/oli

OMIM – Online Mendelian Inheritance in Man
http://www.ncbi.nlm.nih.gov/omim

OpenClinica: Professional Open Source Solutions for the Clinical Research Enterprise
https://community.openclinica.com/

Pathway Studio Biology Information Solution                                                                                                                                                                                                                                                                             http://www.elsevier.com/online-tools/pathway-studio/biological-database

PharmGKB: The Pharmacogenetics and Pharmacogenomics Knowledge Base
http://www.pharmgkb.org/

PhenX Toolkit
https://www.phenxtoolkit.org/

Pleiades Promoter Project
http://www.pleiades.org/index.php

PPAR Research
http://www.hindawi.com/journals/ppar/

Project Ensembl
http://asia.ensembl.org

ProteinDBS
http://proteindbs.rnet.missouri.edu/

Protein Journal
http://link.springer.com/journal/10930

ProteinScience.com – The Proteomics Portal™
http://www.proteinscience.com/index.htm

Proteomics
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291615-9861

PROWL [Mass Spectrometry of Biological Macromolecules]
http://prowl.rockefeller.edu

PSI-Nature Structural Biology Knowledgebase (PSI SBKB)
http://sbkb.org/

RECAP – Informing Key Biopharmaceutical Decisions                                                                                                                                                                                                                                                                            http://www.recap.com/

RECODE : Database of Translational Recoding Events
http://recode.genetics.utah.edu/

Registry of Standard Biological Parts
http://parts.igem.org/Main_Page

Russian Journal of Genetics
http://link.springer.com/journal/11177

Scalable Molecular Dynamics (NAMD)
http://www.ks.uiuc.edu/Research/namd/

SciCasts                                                                                                                                                                                                                                                                                                                                                                              http://scicasts.com/

Selected Web Sites of Interest to Kineticists, Modelers, Computational Biologists, Theoretical Biologists and Bioinformaticians
http://www.bioinformaticsservices.com/bis/resources/kinweb.html

SIGMA: Large Scale Machine Learning Toolkit
http://research.microsoft.com/en-us/projects/sigma/

Silencing Genomes
http://www.silencinggenomes.org/

S/MARt DB
http://smartdb.bioinf.med.uni-goettingen.de/

Source Code for Biology and Medicine
http://www.scfbm.org/

STRBase : Short Tandem Repeat DNA Internet Database
http://www.cstl.nist.gov/div831/strbase

StructuralBiology KnowledgeBase                                                                                                                                                                                                                                                                                                                                http://sbkb.org/

Synapse
http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291098-2396

Talking Glossary of Genetic Terms
http://www.genome.gov/glossary/

Textpresso
http://www.textpresso.org/

The Genetic Codes
http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi?mode=c

The PubChem Project
http://pubchem.ncbi.nlm.nih.gov/

The TAMBIS Project
http://www.cs.man.ac.uk/~stevensr/tambis/

The Wellcome Trust Sanger Institute
http://www.sanger.ac.uk/

Thomson Reuters RECAP – Informing Key Biopharmaceutical Decisions
http://www.recap.com/

ToPNet (Protein Topology Calculation Software)
http://networks.gersteinlab.org/

Transinsight – Intelligent Search Technologies for the Life Sciences
http://transinsight.com/?lang=en

Translational OncoGenomics
http://www.la-press.com/translational-oncogenomics-journal-j19

Transmembrane Structure Prediction Servers
http://split.pmfst.hr/split/4/others.html

TranspoGene Server
http://transpogene.tau.ac.il/

Tree of Life Web Project (ToL)
http://tolweb.org/tree/

Tripos Discovery Informatics
http://www.tripos.com/

Tsinghua University-Institute of Bioinformatics: DBSubLoc
http://www.bioinfo.tsinghua.edu.cn/~guotao/intro.html

UCLA Bioinformatics Program                                                                                                                                                                                                                                                                                                    http://www.bioinformatics.ucla.edu/

UCSC Genome Bioinformatics
http://hgwdev-hiram.cse.ucsc.edu/index.html

VADLO – Life Sciences Search Engine
http://www.vadlo.com/

Visual Complexity
http://www.visualcomplexity.com/

YSearch – Public Y-DNA Database
http://www.ysearch.org/

©2014 Marcus P. Zillman, M.S., A.M.H.A.

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